diff --git a/src/cryogen_core/compiler.clj b/src/cryogen_core/compiler.clj
index d6dc776..e809770 100644
--- a/src/cryogen_core/compiler.clj
+++ b/src/cryogen_core/compiler.clj
@@ -42,21 +42,21 @@
   implemented Markup protocol and specified root directory. It defaults to
   looking under the implemented protocol's subdirectory, but fallsback to look
   at the templates directory."
-  [root mu ignored-files]
-  (let [assets (new-io/find-assets (str "templates/" (m/dir mu)) [root] (m/ext mu) ignored-files)]
+  [root mu fs-prefix ignored-files]
+  (let [assets (new-io/find-assets (str "templates/" (m/dir mu)) [root] fs-prefix (m/ext mu) ignored-files)]
     (if (seq assets)
       assets
-      (new-io/find-assets "templates" [root] (m/ext mu) ignored-files))))
+      (new-io/find-assets "templates" [root] fs-prefix (m/ext mu) ignored-files))))
 
 (defn find-posts
   "Returns a list of markdown files representing posts under the post root."
-  [{:keys [post-root ignored-files]} mu]
-  (find-entries post-root mu ignored-files))
+  [{:keys [post-root fs-prefix ignored-files]} mu]
+  (find-entries post-root mu fs-prefix ignored-files))
 
 (defn find-pages
   "Returns a list of markdown files representing pages under the page root."
-  [{:keys [page-root ignored-files]} mu]
-  (find-entries page-root mu ignored-files))
+  [{:keys [page-root fs-prefix ignored-files]} mu]
+  (find-entries page-root mu fs-prefix ignored-files))
 
 (defn parse-post-date
   "Parses the post date from the post's file name and returns the corresponding java date object"
@@ -466,6 +466,7 @@
                      new-io/get-resource
                      slurp
                      read-string
+                     (update-in [:fs-prefix] (fnil str ""))
                      (update-in [:blog-prefix] (fnil str ""))
                      (update-in [:page-root] (fnil str ""))
                      (update-in [:post-root] (fnil str ""))
diff --git a/src/cryogen_core/new_io.clj b/src/cryogen_core/new_io.clj
index 4e6b80a..c1f7dd4 100644
--- a/src/cryogen_core/new_io.clj
+++ b/src/cryogen_core/new_io.clj
@@ -71,8 +71,8 @@
 extension (ext) ignoring any files that match the given (ignored-files).
 First make sure that the root directory exists, if yes: process as normal;
 if no, return empty vector."
-  [base-path paths ext ignored-files]
-  (let [assets (cp-io/get-resources "content" base-path paths)
+  [base-path paths fs-prefix ext ignored-files]
+  (let [assets (cp-io/get-resources fs-prefix base-path paths)
         filter-file (fn [xs] (filter #(= (:resource-type %) :file) xs))
         filter-ext (fn [xs] (filter #(= (get-file-extension-from-resource %) ext) xs))
         cast-file (fn [java-path] (io/as-file (.toString java-path)))
diff --git a/src/cryogen_core/sitemap.clj b/src/cryogen_core/sitemap.clj
index 75a2868..e4d1709 100644
--- a/src/cryogen_core/sitemap.clj
+++ b/src/cryogen_core/sitemap.clj
@@ -19,7 +19,7 @@
      {:tag :urlset
       :attrs {:xmlns "http://www.sitemaps.org/schemas/sitemap/0.9"}
       :content
-      (for [^java.io.File f (new-io/find-assets "" ["public"] ".html" ignored-files)]
+      (for [^java.io.File f (new-io/find-assets "" ["public"] "" ".html" ignored-files)]
         {:tag :url
          :content
          [{:tag :loc